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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cbx1, chromobox 1
Sequence ID:NM_007622
Entrez Gene ID:12412
Ensembl ID:ENSMUSG00000018666

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11 58.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 96789158 - 96808640

NM_007622 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12189665044996650666
2193959666208496662260
3965739666274296662919
5746689666404196664135
6698179666792996668077
81812749666949796669953

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6313666Full LengthBC055290chromobox homolog 1 (Drosophila HP1 beta)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031648  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007622 NP_031648 P83917 Chromo
Chromo_shadow

Related Sequences

 
mRNAGenPeptSwissProt
BC055290 AAH55290 Q7TPM0
AK014215 BAB29211 P83917
AK017608 BAB30836 Q9CYJ8
X56690 CAA40018 P83917

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cbx1 NP_031648 H.sapiens CBX1 10951 Gene Info NP_001120700 100
R.norvegicus Cbx1 360609   XP_340886 99
D.melanogaster HP1b 31834   NP_001162713 63
A.gambiae AgaP_AGAP004723 1278505   XP_318105 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)