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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ccl2, chemokine (C-C motif) ligand 2
Sequence ID:NM_011333
Entrez Gene ID:20296
Ensembl ID:ENSMUSG00000035385

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C-E1|11 46.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 82035638 - 82037199

NM_011333 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11618184907881849238
1622798184998481850101
2808068185042781850953

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40131170Full LengthBC145867chemokine (C-C motif) ligand 2
40131172Full LengthBC145869chemokine (C-C motif) ligand 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035463  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011333 NP_035463 P10148
Q5SVU3
IL8

Related Sequences

 
mRNAGenPeptSwissProt
AF065929 AAF15379 P10148
AF065930 AAF15380 P10148
Q5SVU3
AF065931 AAF15381 P10148
Q5SVU3
AF065932 AAF15382 P10148
Q5SVU3
AF065933 AAF15383 P10148
Q5SVU3
BC055070 AAH55070 Q7TMS1
BC145867 AAI45868 Q5SVU3
BC145869 AAI45870 Q5SVU3
AK132590 BAE21250 P10148
Q5SVU3
AK150937 BAE29972 P10148
Q5SVU3
AK151789 BAE30690 Q3U5S8
AK153443 BAE31998 Q3U5S8
AK153468 BAE32019 P10148
Q5SVU3
AK153520 BAE32062 Q3U5L6
CT010187 CAJ18395 P10148
Q5SVU3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl2 NP_035463 R.norvegicus Ccl2 24770   NP_113718 82
H.sapiens CCL13 6357 Gene Info NP_005399 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta