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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. BC004004, cDNA sequence BC004004
Sequence ID:NM_030561
Entrez Gene ID:80748
Ensembl ID:ENSMUSG00000052712

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17|17 B1

Chromosomal Position (from UCSC)

Chromosomal Position:17: 29282183 - 29302887

NM_030561 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12152940573229405946
2163062941480129414891
3075142941900429419211
5157282941962229419835
7298832943095129431105
88410232943121929431358
102411532943350429433633
115412772943558629435709
127828092943830029439831

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3492768Full LengthBC004004cDNA sequence BC004004
6488611Full LengthBC058575cDNA sequence BC004004

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_030561 NP_085038 Q99KU6  

Related Sequences

 
mRNAGenPeptSwissProt
BC004004 AAH04004 Q99KU6
BC058575 AAH58575 Q99KU6
AK030596 BAC27038 Q99KU6
AK151327 BAE30307 Q3UAK7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus BC004004 NP_085038 R.norvegicus RGD735065 294311   NP_955411 95
H.sapiens C6orf89 221477 Gene Info NP_689947 84

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)