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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ist1, increased sodium tolerance 1 homolog (yeast)
Sequence ID:NM_028018
Entrez Gene ID:71955
Ensembl ID:ENSMUSG00000031729

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 D3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 109671328 - 109693264

NM_028018 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
121331112195221112196540
13321380112199275112199323
13811473112200657112200749
14741674112201385112201585
16751785112202754112202864
17861869112203323112203406
18701957112206006112206093
19582138112206497112206677
21392241112207575112207677
22422352112217083112217193

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2631157Full LengthBC039052RIKEN cDNA 2400003C14 gene
4507347Full LengthBC017605RIKEN cDNA 2400003C14 gene

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_082294  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028018 NP_082294 Q9CX00 DUF292

Related Sequences

 
mRNAGenPeptSwissProt
BC017605 AAH17605 Q9CX00
BC039052 AAH39052 Q8BHC2
AK010262 BAB26804 Q9CX00
AK050468 BAC34273 Q8BHC2
AK088192 BAC40200 Q9CX00
AK122215 BAC65497 Q9CX00
AK152830 BAE31530 Q9CX00

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 2400003C14Rik NP_082294 R.norvegicus Ist1 307833   NP_001017454 99
H.sapiens IST1 9798 Gene Info NP_055576 97
D.melanogaster CG10103 38750   NP_648058 56
A.gambiae AgaP_AGAP005882 1276549   XP_315909 54
C.elegans K10C8.3 179737   NP_506170 48

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)