Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cltb, clathrin, light polypeptide (Lcb)
Sequence ID:NM_028870
Entrez Gene ID:74325
Ensembl ID:ENSMUSG00000047547

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, stomach, synovium, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13 B1|13

Chromosomal Position (from UCSC)

Chromosomal Position:13: 54593552 - 54599062

NM_028870 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
111045469429954695402
110512165470008254700193
121713345470040454700521
133513815470800454708050
138215765471243854712632

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5699653Full LengthBC070404clathrin, light polypeptide (Lcb)
1433038IncompleteBC037505clathrin, light polypeptide (Lcb)
40110956IncompleteBC128349clathrin, light polypeptide (Lcb)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083146  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028870 NP_083146 Q3TWZ9 Clathrin_lg_ch

Related Sequences

 
mRNAGenPeptSwissProt
BC070404 AAH70404 Q6IRU5
BC128349 AAI28350 A2VCP8
AK009844 BAB26539 Q6IRU5
AK029382 BAC26430 Q3TWZ9
Q6IRU5
AK045989 BAC32563 Q6IRU5
AK146816 BAE27455 Q3TWZ9
AK159480 BAE35117 Q3TWZ9
AK167531 BAE39600 Q3TJ95

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cltb NP_083146 R.norvegicus Cltb 116561   NP_446287 99
H.sapiens CLTB 1212 Gene Info NP_001825 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)