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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Psmc3, Proteasome (prosome, macropain) 26S subunit, ATPase 3
Sequence ID:NM_008948
Entrez Gene ID:19182
Ensembl ID:ENSMUSG00000002102

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E1|2 47.0

Chromosomal Position (from UCSC)

Chromosomal Position:2: 91054296 - 91059435

 Exon Info From UCSC:
NM_008948

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3603053Full LengthBC005783proteasome (prosome, macropain) 26S subunit, ATPase 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032974  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008948 NP_032974 O88685 AAA

Related Sequences

 
mRNAGenPeptSwissProt
BC005783 AAH05783 O88685
D49686 BAA32559 O88685
AK150189 BAE29367 Q3UD94
AK151370 BAE30344 Q3U8Y7
AK152018 BAE30880 Q3U8Y7
AK167002 BAE39181 Q3TKG4
AK167061 BAE39223 Q3TKC2
AK168263 BAE40211 Q3THI5
AK168616 BAE40481 Q3U8Y7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Psmc3 NP_032974 R.norvegicus Psmc3 29677   NP_113783 100
H.sapiens PSMC3 5702 Gene Info NP_002795 99
A.gambiae AgaP_AGAP000616 1271616   XP_310465 86
D.melanogaster Tbp-1 42805   NP_524464 85
C.elegans rpt-5 172238   NP_491672 83
A.thaliana RPT5B 837431   NP_172384 78
A.thaliana RPT5A 819718   NP_187204 77
N.crassa NCU04414 3873668   XP_957491 75
P.falciparum PF11_0314 810861   XP_001347985 74
S.pombe rpt5 3361462   NP_001018261 72
S.cerevisiae RPT5 854284   NP_014760 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)