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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slit2, slit homolog 2 (Drosophila)
Sequence ID:NM_178804
Entrez Gene ID:20563
Ensembl ID:ENSMUSG00000031558

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B3|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 48224702 - 48306282

 Exon Info From UCSC:
NM_178804

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9054050Full LengthBC145487slit homolog 2 (Drosophila)
9054051Full LengthBC145488slit homolog 2 (Drosophila)
9087690Full LengthBC150779slit homolog 2 (Drosophila)
6410513IncompleteBC059267slit homolog 2 (Drosophila)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_848919  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_178804 NP_848919 Q9R1B9 EGF
LRR_1
LRRNT
LRRCT
Laminin_G_2

Related Sequences

 
mRNAGenPeptSwissProt
AF074960 AAD04345 Q9R1B9
AF144628 AAD44759 Q9R1B9
BC059267 AAH59267 Q9R1B9
BC145487 AAI45488 B2RX05
BC145488 AAI45489 B7ZNW9
BC150779 AAI50780 B2RX05
AK053913 BAC35589 Q8BPJ0
AK220505 BAD90514 Q5DTL5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slit2 NP_848919 R.norvegicus Slit2 360272   NP_072154 98
H.sapiens SLIT2 9353 Gene Info NP_004778 97
A.gambiae AgaP_AGAP002793 1273169   XP_312121 48
D.melanogaster sli 36746   NP_476727 47
C.elegans slt-1 181562   NP_510437 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)