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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rps21, Ribosomal protein S21
Sequence ID:NM_025587
Entrez Gene ID:66481
Ensembl ID:ENSMUSG00000039001

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, prostate, retina, salivary gland, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 H4|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 180257416 - 180258436

NM_025587 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
169179992083179992151
70132179992325179992387
133196179992492179992555
197268179992690179992761
269324179992934179992989
325391179993082179993148

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3468174Full LengthBC027563ribosomal protein S21
6758965Full LengthBC086912ribosomal protein S21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079863  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025587 NP_079863 Q9CQR2 Ribosomal_S21e

Related Sequences

 
mRNAGenPeptSwissProt
BC027563 AAH27563 Q9CQR2
BC086912 AAH86912 Q9CQR2
AK007846 BAB25301 Q9CQR2
AK007850 BAB25304 Q9CQR2
AK010637 BAB27081 Q9CQR2
AK012488 BAB28274 Q9CQR2
AK010610 BAC25307 Q8C1L7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rps21 NP_079863 R.norvegicus Rps21 81775   NP_112373 99
R.norvegicus LOC100363012 100363012   XP_002729602 98
H.sapiens RPS21 6227 Gene Info NP_001015 95
A.gambiae AgaP_AGAP009431 1269220   XP_307843 72
D.melanogaster oho23B 33487   NP_722854 72
C.elegans rps-21 176011   NP_498579 66
S.pombe rps21 2540806   NP_595852 58
S.cerevisiae RPS21B 853305   NP_012399 57
S.cerevisiae RPS21A 853931   NP_012983 57
N.crassa NCU08627 3880995   XP_964835 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)