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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cacna1f, calcium channel, voltage-dependent, alpha 1F subunit
Sequence ID:NM_019582
Entrez Gene ID:54652
Ensembl ID:ENSMUSG00000031142

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X A1.1|X 1.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 7607103 - 7635194

 Exon Info From UCSC:
NM_019582

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100062089Full LengthBC156573calcium channel, voltage-dependent, alpha 1F subunit
4501329IncompleteBC057653calcium channel, voltage-dependent, alpha 1F subunit
100015185BC146312calcium channel, voltage-dependent, alpha 1F subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062528  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019582 NP_062528 Q9JIS7 Ion_trans

Related Sequences

 
mRNAGenPeptSwissProt
AF192497 AAF86764 Q9JIS7
BC146312 AAI46313  
BC156573 AAI56574  
AK044695 BAC32037 Q8C8Q4
AK136273 BAE22907 Q3UWK7
AJ579852 CAE30292 Q7TNI3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cacna1f NP_062528 R.norvegicus Cacna1f 114493   NP_446153 97
H.sapiens CACNA1F 778 Gene Info NP_005174 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)