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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cdk5rap1, CDK5 regulatory subunit associated protein 1
Sequence ID:NM_025876
Entrez Gene ID:66971
Ensembl ID:ENSMUSG00000027487

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 H2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 154335387 - 154372719

 Exon Info From UCSC:
NM_025876

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3666341Full LengthBC025132CDK5 regulatory subunit associated protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080152  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025876 NP_080152 Q8BTW8 UPF0004
TRAM
Radical_SAM

Related Sequences

 
mRNAGenPeptSwissProt
BC025132 AAH25132 Q8BTW8
AK010097 BAB26700 Q8BTW8
AK088517 BAC40398 Q8BTW8
AK136570 BAE23052 Q3UW67

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cdk5rap1 NP_080152 R.norvegicus Cdk5rap1 252827   NP_663773 95
H.sapiens CDK5RAP1 51654 Gene Info NP_057492 88
A.gambiae AgaP_AGAP012104 1280572   XP_320425 58
D.melanogaster CG6345 41271   NP_650002 54
A.thaliana AT4G36390 829791   NP_195357 52
C.elegans F25B5.5 175841   NP_498290 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)