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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scap, SREBF chaperone
Sequence ID:NM_001001144
NM_001103162
Entrez Gene ID:235623
Ensembl ID:ENSMUSG00000032485

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 F2|9 58.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 110333465 - 110384945

 Exon Info From UCSC:
NM_001001144
NM_001103162

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6849461Full LengthBC072633SREBF chaperone
30535805Full LengthBC070437SREBF chaperone
4208747IncompleteBC069955SREBF chaperone
4208748IncompleteBC055472SREBF chaperone
5251383IncompleteBC039638SREBP cleavage activating protein
5252423IncompleteBC051066SREBF chaperone

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001001144  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001001144 NP_001001144 Q6GQT6 WD40
NM_001103162 NP_001096632    

Related Sequences

 
mRNAGenPeptSwissProt
BC051066 AAH51066 Q6GQT6
BC055472 AAH55472 Q6GQT6
BC069955 AAH69955 Q6GQT6
BC070437 AAH70437 Q6GQT6
BC072633 AAH72633 Q6GQT6
AK172912 BAD32190 Q6GQT6
AK134160 BAE22036 Q3UZ25
AK146658 BAE27338 Q6GQT6
AK150275 BAE29431 Q6GQT6
AK152478 BAE31252 Q6GQT6
AK153330 BAE31909 Q6GQT6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scap NP_001001144 R.norvegicus Scap 301024   NP_001094436 98
H.sapiens SCAP 22937 Gene Info NP_036367 92
A.gambiae AgaP_AGAP011336 1270602   XP_309314 38
D.melanogaster SCAP 35529   NP_788277 38
C.elegans scp-1 174479   NP_001022051 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta