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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tbc1d20, TBC1 domain family, member 20
Sequence ID:NM_024196
Entrez Gene ID:67231
Ensembl ID:ENSMUSG00000027465

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2|2 H1

Chromosomal Position (from UCSC)

Chromosomal Position:2: 152293875 - 152312064

NM_024196 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1169152119607152119775
170355152127887152128072
356436152130681152130761
437623152133724152133910
624725152134065152134166
726867152136121152136262
8681055152137052152137239
10561936152137445152138325

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3991310Full LengthBC040089TBC1 domain family, member 20
4192736Full LengthBC034504TBC1 domain family, member 20
3489034IncompleteBC002196TBC1 domain family, member 20

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024196 NP_077158 Q9D9I4  

Related Sequences

 
mRNAGenPeptSwissProt
BC002196 AAH02196 Q9D9I4
BC034504 AAH34504 Q0P648
Q9D9I4
BC040089 AAH40089 Q9D9I4
AK006877 BAB24777 Q9D9I4
AK076124 BAC36202 Q9D9I4
AK158274 BAE34442 Q9D9I4
AK168985 BAE40785 Q3TFW3
AK172349 BAE42961 Q3T9Q9
AK172372 BAE42970 Q3T9Q0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tbc1d20 NP_077158 R.norvegicus Tbc1d20 362237   NP_001004281 98
H.sapiens TBC1D20 128637 Gene Info NP_653229 93
D.melanogaster CG17883 3355139   NP_001036448 46
A.gambiae AgaP_AGAP008312 1277674   XP_317154 44
C.elegans tbc-20 175139   NP_497068 41
N.crassa NCU05272 3878062   XP_961909 36
S.pombe gyp10 2541149   NP_595501 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)