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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Rabgef1, RAB guanine nucleotide exchange factor (GEF) 1
Sequence ID:NM_019983
NM_001199059
Entrez Gene ID:56715
Ensembl ID:ENSMUSG00000025340

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5|5 F

Chromosomal Position (from UCSC)

Chromosomal Position:5: 130171847 - 130214342

Transcript StartTranscript EndChromosomal Start Chromosomal End
1407130663049130663455
408574130666746130666912
575741130673819130673985
742823130682878130682959
824956130684555130684687
9571048130686293130686384
10491305130687731130687987
13062809130688703130690206

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4507477Full LengthBC018229RAB guanine nucleotide exchange factor (GEF) 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_064367  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001199059 NP_001185988    
NM_019983 NP_064367 Q9JM13 zf-A20
VPS9

Related Sequences

 
mRNAGenPeptSwissProt
AF093590 AAF28738 Q9JM13
BC018229 AAH18229 Q9JM13
AK044568 BAC31984 Q9JM13
AK146734 BAE27396 Q9JM13

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rabgef1 NP_064367 R.norvegicus Rabgef1 360797   NP_001101803 99
H.sapiens RABGEF1 27342 Gene Info NP_055319 96
C.elegans rabx-5 176481   NP_499337 37
A.gambiae AgaP_AGAP005551 1276236   XP_315556 35
D.melanogaster CG9139 38144   NP_612093 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)