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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Calm3, calmodulin 3
Sequence ID:NM_007590
Entrez Gene ID:12315
Ensembl ID:ENSMUSG00000019370

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A2|7 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 16915540 - 16916785

NM_007590 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2616231750072717502324
162417591750242317502558
176018661750273417502840
186720101750293317503076
201120411750498317505013
204222331750918917509380

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6411878Full LengthBC050926calmodulin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031616  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007590 NP_031616 P62204 efhand

Related Sequences

 
mRNAGenPeptSwissProt
M19380 AAA66181 P62204
BC050926 AAH50926 P62204
AK083996 BAC39089 P62204
AK151610 BAE30549 P62204
AK152754 BAE31469 P62204
AK153179 BAE31782 P62204

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Calm3 NP_031616 M.musculus Calm2 12314 Gene Info NP_031615 100
M.musculus Calm1 12313 Gene Info NP_033920 100
R.norvegicus Calm3 24244   NP_036650 100
R.norvegicus Calm1 24242   NP_114175 100
R.norvegicus Calm2 50663   NP_059022 100
A.gambiae AgaP_AGAP010957 1271007   XP_309749 99
C.elegans cmd-1 178614   NP_503386 98
D.melanogaster Cam 36329   NP_523710 98
A.thaliana CAM4 842959   NP_176814 89

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta