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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Lig1, ligase I, DNA, ATP-dependent
Sequence ID:NM_001083188
NM_001199310
NM_010715
Entrez Gene ID:16881
Ensembl ID:ENSMUSG00000056394

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 A1|7 4.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:7: 13278834 - 13289430

 Exon Info From UCSC:
NM_001083188
NM_010715

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4911261Full LengthBC028287ligase I, DNA, ATP-dependent
8861561Full LengthBC138541ligase I, DNA, ATP-dependent
8861562Full LengthBC138542ligase I, DNA, ATP-dependent

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_034845  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001083188 NP_001076657      
NM_001199310 NP_001186239      
NM_010715 NP_034845 P37913 EC 6.5.1.1 DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U04674 AAA70403 P37913 EC 6.5.1.1
U19604 AAB60500 P37913 EC 6.5.1.1
BC028287 AAH28287 Q8R055  
BC138541 AAI38542 Q3U4X8  
BC138542 AAI38543 Q3U4X8  
AK053906 BAC35585 Q8BPJ2  
AK153993 BAE32302 Q3U4X8  
AK161793 BAE36577 Q3TSU8  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lig1 NP_001076657 R.norvegicus Lig1 81513   NP_001019439 94
H.sapiens LIG1 3978 Gene Info NP_000225 84
A.gambiae AgaP_AGAP009222 1280180   XP_319999 55
D.melanogaster CG5602 37791   NP_611843 52
C.elegans lig-1 179502   NP_741625 51
A.thaliana LIG1 837333   NP_172293 50
S.pombe cdc17 2541849   NP_593318 49
A.thaliana AT1G49250 841349   NP_175351 48
N.crassa NCU06481 3873294   XP_957121 46
S.cerevisiae CDC9 851391   NP_010117 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)