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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Necap1, NECAP endocytosis associated 1
Sequence ID:NM_026267
Entrez Gene ID:67602
Ensembl ID:ENSMUSG00000030327

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6 F2|6

Chromosomal Position (from UCSC)

Chromosomal Position:6: 122874556 - 122888941

NM_026267 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1107122824574122824680
108208122830430122830530
209313122830675122830779
314395122831518122831599
396504122832285122832393
505688122832831122833014
689791122836769122836871
7922393122837357122838958

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4013043Full LengthBC011466NECAP endocytosis associated 1
8733882Full LengthBC119133NECAP endocytosis associated 1
40129764Full LengthBC120841NECAP endocytosis associated 1
1447955IncompleteBC098227NECAP endocytosis associated 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080543  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026267 NP_080543 Q9CR95 DUF1681

Related Sequences

 
mRNAGenPeptSwissProt
BC011466 AAH11466 Q9CR95
BC119133 AAI19134 Q0VB06
BC120841 AAI20842 Q0VB06
Q9CR95
AK004805 BAB23577 Q9CR95
AK005263 BAB23915 Q9CR95
AK081598 BAC38266 Q9CR95
AK220236 BAD90161 Q571F3
AK168500 BAE40385 Q9CR95
BK000656 DAA01433 Q9CR95

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Necap1 NP_080543 R.norvegicus Necap1 312694   NP_001025090 98
H.sapiens NECAP1 25977 Gene Info NP_056324 94
A.gambiae AgaP_AGAP000322 1271940   XP_310797 59
D.melanogaster CG9132 2768881   NP_996490 54

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)