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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc40a1, solute carrier family 40 (iron-regulated transporter), member 1
Sequence ID:NM_016917
Entrez Gene ID:53945
Ensembl ID:ENSMUSG00000025993

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1|1 B

Chromosomal Position (from UCSC)

Chromosomal Position:1: 45909313 - 45925549

NM_016917 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
116504596491445966563
165122894596773645968374
229025354596908045969325
253626624597515345975279
266327784597572945975844
277929384597800045978159
293930064598156145981628
300733804598206545982438

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2647365Full LengthBC003438solute carrier family 40 (iron-regulated transporter), member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058613  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016917 NP_058613 Q9JHI9 FPN1

Related Sequences

 
mRNAGenPeptSwissProt
AF226613 AAF36696 Q9JHI9
AF231120 AAF44329 Q9JHI9
AF215637 AAF80987 Q9JHI9
BC003438 AAH03438 Q9JHI9
FJ207421 ACO54854 C5H8V4
FJ207422 ACO54855 C5H8V4
FJ207423 ACO54856 C5H8V4
AK008700 BAB25840 Q9JHI9
AK032732 BAC28001 Q9JHI9
AK083288 BAC38844 Q9JHI9
AK144780 BAE26063 Q9JHI9
AK147137 BAE27707 Q9JHI9
AK159294 BAE34969 Q9JHI9
AK159855 BAE35431 Q9JHI9
AK167608 BAE39662 Q3TJ33

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc40a1 NP_058613 R.norvegicus Slc40a1 170840   NP_579849 97
H.sapiens SLC40A1 30061 Gene Info NP_055400 91
A.thaliana IREG1 818427   NP_181380 36
A.thaliana IREG2 831787   NP_195977 34
N.crassa NCU08804 3878139   XP_961991 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)