Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Col4a5, collagen, type IV, alpha 5
Sequence ID:NM_001163155
Entrez Gene ID:12830
Ensembl ID:ENSMUSG00000031274

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

Cytogenetic Location (from UniGene)

Cytogenetic Location:X F2|X 62.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 141475560 - 141688520

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5343488Full LengthBC082788collagen, type IV, alpha 5
3710569IncompleteBC016479procollagen, type IV, alpha 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031762  

Protein Infomation

NM_001163155 NP_001156627    
NM_007736 NP_031762 Q63ZW6 Collagen

Related Sequences

BC043317 AAH43317 Q80V57
BC082788 AAH82788 Q63ZW6
AB041350 BAB13673 Q9ESQ2
AK080682 BAC37980 Q8BNS7
AK133179 BAE21544 Q63ZW6
AK164687 BAE37876 Q3TP61
X82218 CAA57698 P70165
Z35168 CAA84531 Q61436

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Col4a5 NP_001156627 R.norvegicus Col4a5 363457   XP_343779 97
H.sapiens COL4A5 1287 Gene Info NP_000486 91
C.elegans let-2 181708   NP_510664 56
C.elegans emb-9 176314   NP_001022662 54
A.gambiae AgaP_AGAP009200 1280160   XP_319976 54
D.melanogaster Cg25C 33727   NP_723046 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta