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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Col4a5, collagen, type IV, alpha 5
Sequence ID:NM_001163155
NM_007736
Entrez Gene ID:12830
Ensembl ID:ENSMUSG00000031274

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:X F2|X 62.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:X: 141475560 - 141688520

 Exon Info From UCSC:
NM_001163155
NM_007736

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5343488Full LengthBC082788collagen, type IV, alpha 5
3710569IncompleteBC016479procollagen, type IV, alpha 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_031762  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163155 NP_001156627    
NM_007736 NP_031762 Q63ZW6 Collagen
C4

Related Sequences

 
mRNAGenPeptSwissProt
BC043317 AAH43317 Q80V57
BC082788 AAH82788 Q63ZW6
AB041350 BAB13673 Q9ESQ2
AK080682 BAC37980 Q8BNS7
AK133179 BAE21544 Q63ZW6
AK164687 BAE37876 Q3TP61
X82218 CAA57698 P70165
Z35168 CAA84531 Q61436

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Col4a5 NP_001156627 R.norvegicus Col4a5 363457   XP_343779 97
H.sapiens COL4A5 1287 Gene Info NP_000486 91
C.elegans let-2 181708   NP_510664 56
C.elegans emb-9 176314   NP_001022662 54
A.gambiae AgaP_AGAP009200 1280160   XP_319976 54
D.melanogaster Cg25C 33727   NP_723046 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta