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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tbrg1, transforming growth factor beta regulated gene 1
Sequence ID:NM_025289
Entrez Gene ID:21376
Ensembl ID:ENSMUSG00000011114

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A4|9

Chromosomal Position (from UCSC)

Chromosomal Position:9: 37649181 - 37657237

NM_025289 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
193403745676637457087
3414833745761537457757
4845943745853337458643
5956923745887437458971
6938393746019937460345
8409763746061737460753
97711973746180037462020
119812683746260637462676
126915833746458237464896

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
1529903Full LengthBC065795transforming growth factor beta regulated gene 1
4223194Full LengthBC040813transforming growth factor beta regulated gene 1
5003215Full LengthBC021331transforming growth factor beta regulated gene 1
5688749Full LengthBC043022transforming growth factor beta regulated gene 1
1396303IncompleteBC054057transforming growth factor beta regulated gene 1
5026967IncompleteBC037145transforming growth factor beta regulated gene 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079565  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_025289 NP_079565 Q3UB74 FYRN
FYRC

Related Sequences

 
mRNAGenPeptSwissProt
BC021331 AAH21331 Q3UB74
BC040813 AAH40813 Q3UB74
BC043022 AAH43022 Q3UB74
BC065795 AAH65795 Q3UB74
DQ144541 AAZ76015 Q3UB74
AK011614 BAB27734 Q9CSZ5
AK131158 BAD21408 Q6KAP9
AK150549 BAE29651 Q3UB74
AK151075 BAE30090 Q3UB74
AK151209 BAE30204 Q3UB74
AK151457 BAE30416 Q3UB74
AK166547 BAE38845 Q3UB74

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tbrg1 NP_079565 R.norvegicus Tbrg1 300521   NP_001009344 97
R.norvegicus LOC100361475 100361475   XP_002728997 97
H.sapiens TBRG1 84897 Gene Info NP_116200 85
D.melanogaster CG31111 318595   NP_733074 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)