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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Cope, coatomer protein complex, subunit epsilon
Sequence ID:NM_021538
Entrez Gene ID:59042
Ensembl ID:ENSMUSG00000055681

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 B3.3|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 70302784 - 70312990

NM_021538 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11487282668372826830
1492117282853272828594
2123127282953372829633
3134657283039772830549
4665197283184872831901
5206017283239372832474
6027577283423472834389
7588267283552672835594
8279017283660472836678
90210337283675772836888

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2812643Full LengthBC009170coatomer protein complex, subunit epsilon
5709960Full LengthBC083336coatomer protein complex, subunit epsilon
6815918IncompleteBC057328coatomer protein complex, subunit epsilon

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067513  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021538 NP_067513 O89079 Coatomer_E

Related Sequences

 
mRNAGenPeptSwissProt
U89427 AAC36533 O89079
BC009170 AAH09170 O89079
BC083336 AAH83336 O89079
AB039837 BAA92384 O89079
AK003458 BAB22801 Q9D1J2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cope NP_067513 R.norvegicus Cope 290659   NP_001099546 98
H.sapiens COPE 11316 Gene Info NP_009194 91
A.gambiae AgaP_AGAP006625 1277211   XP_316655 45
A.thaliana AT1G30630 839943   NP_174351 44
A.thaliana AT2G34840 818049   NP_181030 43
D.melanogaster epsilonCOP 33908   NP_609037 40
C.elegans F45G2.4 176766   NP_499771 37
N.crassa NCU11274 3877805   XP_961614 33
S.pombe sec28 2540317   NP_595959 27

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)