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Gene Info

Gene Information For:Mm. Smarca4, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Sequence ID:NM_001174078
NM_001174079
NM_011417
Entrez Gene ID:20586
Ensembl ID:ENSMUSG00000032187

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:9 A3|9 6.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 21616380 - 21642571

 Exon Info From UCSC:
NM_001174078
NM_001174079
NM_011417

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30533489Full LengthBC079560SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
4218517IncompleteBC014760SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
4945540IncompleteBC023186SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
5025538IncompleteBC026672SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
5257181IncompleteBC054056SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
5345334IncompleteBC023830SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
6840009IncompleteBC060229SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
30253731IncompleteBC061214SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035547  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001174078 NP_001167549    
NM_001174079 NP_001167550 Q3TKT4  
NM_011417 NP_035547   SNF2_N
Helicase_C
HSA
TCH

Related Sequences

 
mRNAGenPeptSwissProt
U53563 AAB64343 O35845
S68108 AAC60670  
BC014760 AAH14760 Q7TQL1
BC023186 AAH23186 Q8R569
BC023830 AAH23830 Q8CGJ5
BC026672 AAH26672 Q8R0K1
BC054056 AAH54056 Q7TQL1
BC061214 AAH61214 Q6P8K2
BC079560 AAH79560 Q3TKT4
AK051530 BAC34664 Q8BQ54
AK141517 BAE24713 Q3URH5
AK147047 BAE27633 Q3UI73
AK147285 BAE27821 Q3TKT4
AK160825 BAE36034 Q3TKT4
AK166837 BAE39059 Q3TKT4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Smarca4 NP_001167549 R.norvegicus Smarca4 171379   NP_599195 100
H.sapiens SMARCA4 6597 Gene Info NP_001122321 99
A.gambiae AgaP_AGAP010462 1272575   XP_311484 63
D.melanogaster brm 39744   NP_536746 60
C.elegans psa-4 178015   NP_502082 56
A.thaliana ATCHR12 819772   NP_187252 46
A.thaliana AT5G19310 832051   NP_197432 45
S.cerevisiae SNF2 854465   NP_014933 42

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta