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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Pes1, pescadillo homolog 1, containing BRCT domain (zebrafish)
Sequence ID:NM_022889
Entrez Gene ID:64934
Ensembl ID:ENSMUSG00000020430

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 A1|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 3964014 - 3979216

 Exon Info From UCSC:
NM_022889

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2649598Full LengthBC004844pescadillo homolog 1, containing BRCT domain (zebrafish)
4207164Full LengthBC011142pescadillo homolog 1, containing BRCT domain (zebrafish)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075027  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_022889 NP_075027 Q9EQ61 BRCT
Pescadillo_N

Related Sequences

 
mRNAGenPeptSwissProt
AF289539 AAG40734 Q9EQ61
BC004844 AAH04844 Q9EQ61
BC011142 AAH11142 Q9EQ61
AK029075 BAC26278 Q9EQ61
AK088831 BAC40599 Q9EQ61

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Pes1 NP_075027 R.norvegicus Pes1 289740   NP_001037693 96
H.sapiens PES1 23481 Gene Info NP_055118 90
D.melanogaster CG4364 34287   NP_609305 50
S.pombe ppp1 2540659   NP_596543 50
C.elegans lpd-7 176072   NP_498661 49
A.gambiae PESC_ANOGA 1269992   XP_308647 46
N.crassa NCU00925 3880904   XP_964751 46
S.cerevisiae NOP7 852995   NP_011617 45
A.thaliana AT5G14520 831303   NP_196956 44

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)