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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab6a, RAB6A, member RAS oncogene family
Sequence ID:NM_001163663
NM_024287
Entrez Gene ID:19346
Ensembl ID:ENSMUSG00000030704

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7|7 C4

Chromosomal Position (from UCSC)

Chromosomal Position:7: 100607786 - 100640190

 Exon Info From UCSC:
NM_001163663
NM_024287

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3711087Full LengthBC019118RAB6, member RAS oncogene family
3491845IncompleteBC026915RAB6, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_077249  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001163663 NP_001157135    
NM_024287 NP_077249 P35279 Ras

Related Sequences

 
mRNAGenPeptSwissProt
BC019118 AAH19118 P35279
Q3U4W5
BC026915 AAH26915 P35279
M79313 AAK14837 P35279
AB041575 BAA95059 P35279
AK051246 BAC34572 P35279
AK083262 BAC38834 P35279
AK084131 BAC39121 P35279
AK154012 BAE32315 Q3U4W5
AK160134 BAE35649 P35279
AK160866 BAE36058 P35279
AK169842 BAE41406 P35279
AB232596 BAF02858 Q0PD54

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab6a NP_001157135 R.norvegicus Rab6a 84379   NP_445818 100
H.sapiens RAB6A 5870 Gene Info NP_002860 99
A.gambiae AgaP_AGAP011363 4577653   XP_001238010 87
D.melanogaster Rab6 34636   NP_477172 86
C.elegans rab-6.2 181759   NP_510790 80
A.thaliana RABH1e 830890   NP_196588 74
A.thaliana RABH1d 816761   NP_179816 72
A.thaliana RABH1c 830148   NP_195699 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta