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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Sox9, SRY-box containing gene 9
Sequence ID:NM_011448
Entrez Gene ID:20682
Ensembl ID:ENSMUSG00000000567

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11 69.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 112782584 - 112785510

NM_011448 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1806112643523112644328
8071060112645122112645375
10614146112645985112649070

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4165469Full LengthBC034264SRY-box containing gene 9
4949782Full LengthBC024958SRY-box containing gene 9
5320371Full LengthBC023953SRY-box containing gene 9
5351850Full LengthBC023796SRY-box containing gene 9
5354229Full LengthBC023808SRY-box containing gene 9
3590584IncompleteBC004064SRY-box containing gene 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_035578  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_011448 NP_035578 Q04887 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
BC004064 AAH04064 Q04887
BC023796 AAH23796 Q04887
BC023808 AAH23808 Q04887
BC023953 AAH23953 Q04887
BC024958 AAH24958 Q04887
BC034264 AAH34264 Q04887
AF421878 AAL16093 Q04887
FJ790141 ACU12297 C7B5P0
FJ790142 ACU12298 C7B5P1
FJ790143 ACU12299 C7B5P2
FJ790144 ACU12300 C7B5P3
FJ790145 ACU12301 C7B5P4
FJ790146 ACU12302 C7B5P5
FJ790147 ACU12303 C7B5P6
FJ790148 ACU12304 C7B5P7
FJ790149 ACU12305 C7B5P8
FJ790150 ACU12306 C7B5P9
FJ790151 ACU12307 C7B5Q0
FJ790152 ACU12308 C7B5Q1
FJ790153 ACU12309 C7B5Q2
FJ790154 ACU12310 C7B5Q3
FJ790155 ACU12311 C7B5Q4
FJ790156 ACU12312 C7B5Q5
FJ790157 ACU12313 C7B5Q6
FJ790158 ACU12314 C7B5Q7
FJ790159 ACU12315 C7B5Q8
FJ790160 ACU12316 C7B5Q9
AK030187 BAC26830 Q04887
AK049986 BAC34018 Q04887
AK220197 BAD90382 Q571J2
Z18958 CAA79483 Q04887

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Sox9 NP_035578 H.sapiens SOX9 6662 Gene Info NP_000337 97
D.melanogaster Sox100B 45039   NP_651839 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)