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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tbc1d1, TBC1 domain family, member 1
Sequence ID:NM_019636
Entrez Gene ID:57915
Ensembl ID:ENSMUSG00000029174

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 C3.1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 64350503 - 64351478

 Exon Info From UCSC:
NM_019636

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40097712Full LengthBC117931TBC1 domain family, member 1
3500261IncompleteBC004675TBC1 domain family, member 1
6844077IncompleteBC059824TBC1 domain family, member 1
40097713IncompleteBC117932TBC1 domain family, member 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_019636 NP_062610    

Related Sequences

 
mRNAGenPeptSwissProt
U33005 AAA85223 Q60949
BC004675 AAH04675 Q60949
BC117931 AAI17932 Q3U3T9
AK122445 BAC65727 Q60949
AK154591 BAE32696 Q3U3T9
AK159256 BAE34937 Q3TXH9
AK164923 BAE37970 Q3TNW7
AK168763 BAE40599 Q3TGE9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tbc1d1 NP_062610 R.norvegicus Tbc1d1 360937   XP_341216 98
H.sapiens TBC1D1 23216 Gene Info NP_055988 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)