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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Phf17, PHD finger protein 17
Sequence ID:NM_172303
NM_001130185
NM_001130186
NM_001130184
Entrez Gene ID:269424
Ensembl ID:ENSMUSG00000025764

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3 B|3

Chromosomal Position (from UCSC)

Chromosomal Position:3: 41615165 - 41616106

 Exon Info From UCSC:
NM_172303
NM_001130185
NM_001130186
NM_001130184

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5250231Full LengthBC020316PHD finger protein 17
3984250IncompleteBC038026PHD finger protein 17
4487274IncompleteBC026471PHD finger protein 17

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_758507  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130184 NP_001123656    
NM_001130185 NP_001123657    
NM_001130186 NP_001123658    
NM_172303 NP_758507 Q6ZPI0 PHD

Related Sequences

 
mRNAGenPeptSwissProt
BC020316 AAH20316 Q6ZPI0
BC026471 AAH26471 Q6ZPI0
AY357298 AAQ63937 Q6UZ80
AK049332 BAC33688 Q6ZPI0
AK129445 BAC98255 Q6ZPI0
AK147466 BAE27932 Q6ZPI0
BN000281 CAE30496 Q6ZPI0
BN000282 CAE30497 Q6ZPI0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Phf17 NP_758507 R.norvegicus Phf17 310352   NP_001101140 96
H.sapiens PHF17 79960 Gene Info NP_955352 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)