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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Kdm1a, lysine (K)-specific demethylase 1A
Sequence ID:NM_133872
Entrez Gene ID:99982
Ensembl ID:ENSMUSG00000036940

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, stem cell, stomach, testis, thymus, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4 D3|4 66.75 cM

Chromosomal Position (from UCSC)

Chromosomal Position:4: 136550540 - 136555305

 Exon Info From UCSC:
NM_133872

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6815975Full LengthBC059885amine oxidase (flavin containing) domain 2
4019315IncompleteBC019417amine oxidase (flavin containing) domain 2

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133872 NP_598633 Q6ZQ88  

Related Sequences

 
mRNAGenPeptSwissProt
BC019417 AAH19417 Q6ZQ88
BC059885 AAH59885 Q6ZQ88
AK129170 BAC97980 Q6ZQ88

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Kdm1a NP_598633 R.norvegicus Kdm1a 500569   NP_001123570 100
H.sapiens KDM1A 23028 Gene Info NP_055828 98
A.gambiae AgaP_AGAP011661 1280978   XP_320852 63
D.melanogaster Su(var)3-3 40217   NP_730497 57
A.thaliana LDL1 842582   NP_176471 45
N.crassa NCU09120 3875040   XP_958892 37
C.elegans spr-5 173214   NP_493366 29
C.elegans lsd-1 181369   NP_510000 28
S.pombe lsd1 2539805   NP_595398 26

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)