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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Tff1, trefoil factor 1
Sequence ID:NM_009362
Entrez Gene ID:21784
Ensembl ID:ENSMUSG00000024032

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:17 A3.3|17 17.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:17: 31161397 - 31165049

NM_009362 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11983129834031298537
1993513129959931299751
3524783130187131301997

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40126373Full LengthBC117054trefoil factor 1
40126375Full LengthBC117056trefoil factor 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033388  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_009362 NP_033388 Q08423 Trefoil

Related Sequences

 
mRNAGenPeptSwissProt
BC117054 AAI17055 Q08423
Q149Y8
BC117056 AAI17057 Q149Y8
AK008625 BAB25787 Q08423
AK008809 BAB25907 Q08423
AK008873 BAB25943 Q08423
AK010179 BAB26751 Q08423
AK131896 BAE20857 Q08423
AK160174 BAE35673 Q08423
Z21858 CAA79913 Q08423

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Tff1 NP_033388 M.musculus Gm3090 100041004   XP_001475747 100
R.norvegicus Tff1 117270   NP_476470 83
H.sapiens TFF1 7031 Gene Info NP_003216 67

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta