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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Slc15a4, solute carrier family 15, member 4
Sequence ID:NM_133895
Entrez Gene ID:100561
Ensembl ID:ENSMUSG00000029416

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G1.2|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 127595666 - 127617414

NM_133895 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
151121128076035128077141
11221280128080789128080947
12811436128082227128082382
14371605128084062128084230
16061683128084480128084557
16841852128084907128085075
18532142128089141128089430
21432720128097184128097761

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4502184Full LengthBC016233solute carrier family 15, member 4

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_598656  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_133895 NP_598656 Q91W98 PTR2

Related Sequences

 
mRNAGenPeptSwissProt
BC016233 AAH16233 Q91W98
AY050630 AAK95566 Q91W98

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slc15a4 NP_598656 R.norvegicus Slc15a4 246280   NP_653359 98
H.sapiens SLC15A4 121260 Gene Info NP_663623 89
A.thaliana AT2G02020 814733   NP_178311 33
A.thaliana AT1G62200 842516   NP_176411 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)