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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Atg13, autophagy related 13
Sequence ID:NM_145528
Entrez Gene ID:51897
Ensembl ID:ENSMUSG00000027244

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2 E1|2

Chromosomal Position (from UCSC)

Chromosomal Position:2: 91674625 - 91675190

 Exon Info From UCSC:
NM_145528

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2648797Full LengthBC016669DNA segment, Chr 2, ERATO Doi 391, expressed
5343236Full LengthBC023673DNA segment, Chr 2, ERATO Doi 391, expressed
5346303Full LengthBC023712DNA segment, Chr 2, ERATO Doi 391, expressed
5359944Full LengthBC033419DNA segment, Chr 2, ERATO Doi 391, expressed

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_145528 NP_663503 Q91YI1  

Related Sequences

 
mRNAGenPeptSwissProt
BC016669 AAH16669 Q91YI1
BC023673 AAH23673 Q91YI1
BC023712 AAH23712 Q91YI1
BC024457 AAH24457 Q8K1C4
BC033419 AAH33419 Q91YI1
AK122339 BAC65621 Q91YI1
AK149672 BAE29016 Q91YI1
AK171206 BAE42312 Q91YI1
AK171440 BAE42453 Q91YI1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Atg13 NP_663503 R.norvegicus Atg13 362164   XP_342466 97
H.sapiens ATG13 9776 Gene Info NP_001136145 94

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)