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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ccl5, chemokine (C-C motif) ligand 5
Sequence ID:NM_013653
Entrez Gene ID:20304
Ensembl ID:ENSMUSG00000035042

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 C|11 47.4 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 83525925 - 83530489

NM_013653 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
493348333928083339565
3354468334265783342768
4475798334388783344019

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4925413Full LengthBC033508chemokine (C-C motif) ligand 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038681  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013653 NP_038681 P30882 IL8

Related Sequences

 
mRNAGenPeptSwissProt
M77747 AAA40029 P30882
S37648 AAB22330 P30882
AF065944 AAC17511 Q5XZF2
P30882
AF065945 AAC17512 Q5XZF2
P30882
AF065946 AAC17513 Q5XZF2
P30882
AF065947 AAC17514 Q5XZF2
P30882
AF128187 AAF22528 Q5XZF2
P30882
BC033508 AAH33508 Q5XZF2
P30882
AY722103 AAU43779 Q5XZF2
P30882
AK003101 BAB22566 Q5XZF2
P30882
CT010315 CAJ18523 Q5XZF2
P30882

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ccl5 NP_038681 R.norvegicus Ccl5 81780   NP_112378 97
H.sapiens CCL5 6352 Gene Info NP_002976 80

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta