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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Katnb1, katanin p80 (WD40-containing) subunit B 1
Sequence ID:NM_028805
Entrez Gene ID:74187
Ensembl ID:ENSMUSG00000031787

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 D1|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 95081269 - 95099058

 Exon Info From UCSC:
NM_028805

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5322489Full LengthBC045200katanin p80 (WD40-containing) subunit B 1
4982787IncompleteBC024500katanin p80 (WD40-containing) subunit B 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083081  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_028805 NP_083081 Q8BG40 WD40

Related Sequences

 
mRNAGenPeptSwissProt
BC024500 AAH24500 Q8BG40
BC045200 AAH45200 Q8BG40
AK010364 BAB26884 Q8BG40
AK031630 BAC27487 Q8BG40
AK034103 BAC28588 Q8BG40
AK049345 BAC33697 Q8BG40
AK087973 BAC40067 Q8BG40

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Katnb1 NP_083081 R.norvegicus Katnb1 291852   NP_001019917 98
H.sapiens KATNB1 10300 Gene Info NP_005877 96
A.gambiae AgaP_AGAP000319 1271944   XP_310805 39
D.melanogaster kat80 32581   NP_523363 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)