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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Nup50, nucleoporin 50
Sequence ID:NM_016714
Entrez Gene ID:18141
Ensembl ID:ENSMUSG00000016619

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 E2|15 49.3 cM

Chromosomal Position (from UCSC)

Chromosomal Position:15: 84927377 - 84939848

NM_016714 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12238475385784754079
2243028475779784757875
3033868475980184759884
3875708476396484764147
57112308476529384765952
123113128476791684767997
131314318476878784768905
143247498477007584773392

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
6409279Full LengthBC059239nucleoporin 50
6837587Full LengthBC065102nucleoporin 50
6853000Full LengthBC060234nucleoporin 50
4038443IncompleteBC019552nucleoporin 50
6410281IncompleteBC054750nucleoporin 50

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_016714 NP_057923 Q9JIH2  

Related Sequences

 
mRNAGenPeptSwissProt
AF229256 AAF34721 Q9JIH2
AF251799 AAF70057 Q9JIH2
BC059239 AAH59239 Q9JIH2
BC060234 AAH60234 Q9JIH2
BC065102 AAH65102 Q9JIH2
AK087706 BAC39975 Q9JIH2
AK133371 BAE21620 Q9JIH2
AK133562 BAE21727 Q9JIH2
AK141750 BAE24822 Q9JIH2
AK151947 BAE30821 Q9JIH2
AK152309 BAE31115 Q9JIH2
AK161713 BAE36546 Q9JIH2
AK165581 BAE38272 Q9JIH2
AK168888 BAE40705 Q9JIH2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Nup50 NP_057923 R.norvegicus Npap60 25497   NP_037123 95
H.sapiens NUP50 10762 Gene Info NP_009103 79
D.melanogaster Nup50 35784   NP_610355 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)