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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Cln6, ceroid-lipofuscinosis, neuronal 6
Sequence ID:NM_001033175
Entrez Gene ID:76524
Ensembl ID:ENSMUSG00000032245

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:9 B|9 35.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:9: 62851094 - 62852002

NM_001033175 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11686268659362686760
1692836269237662692490
2843826269376062693858
3835716269477262694960
5726276269539162695446
6287506269691562697037
75121366269842362699808

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100015731Full LengthBC148723ceroid-lipofuscinosis, neuronal 6
40126113IncompleteBC116794ceroid-lipofuscinosis, neuronal 6
40126117IncompleteBC116798ceroid-lipofuscinosis, neuronal 6
100014707BC141471ceroid-lipofuscinosis, neuronal 6

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001033175 NP_001028347 Q3U466  

Related Sequences

 
mRNAGenPeptSwissProt
BC116794 AAI16795 A0PJN2
BC116798 AAI16799 A0PJN2
BC141471 AAI41472  
BC148723 AAI48724  
AK154414 BAE32568 Q3U466

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Cln6 NP_001028347 R.norvegicus Cln6 315746   XP_236325 95
H.sapiens CLN6 54982 Gene Info NP_060352 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)