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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Map1lc3b, microtubule-associated protein 1 light chain 3 beta
Sequence ID:NM_026160
Entrez Gene ID:67443
Ensembl ID:ENSMUSG00000031812

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 E1|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 121596722 - 121597588

NM_026160 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5319360Full LengthBC110308microtubule-associated protein 1 light chain 3 beta
30634082Full LengthBC068180microtubule-associated protein 1 light chain 3 beta
6827429IncompleteBC086774microtubule-associated protein 1 light chain 3 beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080436  

Protein Infomation

NM_026160 NP_080436 Q9CQV6 MAP1_LC3

Related Sequences

BC028812 AAH28812 Q8K161
BC068180 AAH68180 Q9CQV6
BC110308 AAI10309 Q2TBF9
AF255953 AAL83723 Q9CQV6
AK002795 BAB22364 Q9CQV6
AK003106 BAB22569 Q9CQV6
AK003205 BAB22641 Q9CQV6
AK003558 BAB22855 Q9CQV6
AK012604 BAB28350 Q9CQV6
AK132329 BAE21108 Q9CQV6
AK151614 BAE30551 Q9CQV6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Map1lc3b NP_080436 R.norvegicus Map1lc3b 64862   NP_074058 99
H.sapiens MAP1LC3B 81631 Gene Info NP_073729 95

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)