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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Chrna6, cholinergic receptor, nicotinic, alpha polypeptide 6
Sequence ID:NM_021369
Entrez Gene ID:11440
Ensembl ID:ENSMUSG00000031491

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8|8 A3

Chromosomal Position (from UCSC)

Chromosomal Position:8: 27404376 - 27413782

NM_021369 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1613262851368328514993
132723052851696628517944
230624152851878628518895
241624602851980328519847
246126002852219728522336
260129212852409528524415

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4501558Full LengthBC031985cholinergic receptor, nicotinic, alpha polypeptide 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067344  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021369 NP_067344 Q9R0W9 Neur_chan_LBD
Neur_chan_memb

Related Sequences

 
mRNAGenPeptSwissProt
BC031985 AAH31985 Q9R0W9
AY574265 AAS90361 Q6PW44
AK149262 BAE28777 Q9R0W9
AJ245706 CAB53472 Q9R0W9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Chrna6 NP_067344 R.norvegicus Chrna6 81721   NP_476532 94
H.sapiens CHRNA6 8973 Gene Info NP_004189 85
A.gambiae AgaP_AGAP000329 1271929   XP_310786 53
D.melanogaster nAcRalpha-7E 31767   NP_525079 52
C.elegans unc-63 172150   NP_491533 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)