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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Mm. Cdk5rap3, CDK5 regulatory subunit associated protein 3
Sequence ID:NM_030248
Entrez Gene ID:80280
Ensembl ID:ENSMUSG00000018669

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11 D|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 96907815 - 96916496

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3593792Full LengthBC002318CDK5 regulatory subunit associated protein 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_084524  

Protein Infomation

NM_030248 NP_084524 Q99LM2 DUF773

Related Sequences

BC002318 AAH02318 Q99LM2
AK075771 BAC35945 Q99LM2
AK075791 BAC35961 Q99LM2
AK077853 BAC37034 Q99LM2
AK149765 BAE29070 Q99LM2
AK153951 BAE32274 Q3U506
AK161834 BAE36596 Q3TSS9
AK166476 BAE38797 Q3TLJ5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
M.musculus Cdk5rap3 NP_084524 H.sapiens CDK5RAP3 80279 Gene Info NP_788276 89
A.gambiae AgaP_AGAP009811 1279226   XP_318917 43
C.elegans Y113G7B.16 180327   NP_507910 42
A.thaliana AT5G06830 830574   NP_196301 35
D.melanogaster CG30291 246534   NP_726016 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)