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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Npc2, Niemann Pick type C2
Sequence ID:NM_023409
Entrez Gene ID:67963
Ensembl ID:ENSMUSG00000021242

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12 D1|12

Chromosomal Position (from UCSC)

Chromosomal Position:12: 84756491 - 84772867

NM_023409 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1726708609550886098161
267128438610166986101841
284429518610622686106333
295232788611373586114061

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2649564Full LengthBC003471Niemann Pick type C2
3592515Full LengthBC007190Niemann Pick type C2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_075898  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_023409 NP_075898 Q9Z0J0 E1_DerP2_DerF2

Related Sequences

 
mRNAGenPeptSwissProt
BC003471 AAH03471 Q9Z0J0
BC007190 AAH07190 Q9Z0J0
AB021289 BAA35183 Q9Z0J0
AK008603 BAB25771 Q9Z0J0
AK009127 BAB26090 Q9Z0J0
AK151067 BAE30083 Q9Z0J0
AK151133 BAE30141 Q9Z0J0
AK152236 BAE31061 Q3U8F7
AK153020 BAE31654 Q9Z0J0
AK153203 BAE31803 Q9Z0J0
AK154838 BAE32866 Q3U3C2
AK158624 BAE34585 Q9Z0J0
AK159154 BAE34861 Q3TXQ4
AK165263 BAE38111 Q9Z0J0
AK167869 BAE39885 Q9Z0J0
AK170327 BAE41721 Q9Z0J0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Npc2 NP_075898 R.norvegicus Npc2 286898   NP_775141 89
H.sapiens NPC2 10577 Gene Info NP_006423 81
D.melanogaster Npc2a 33374   NP_608637 39

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)