Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Scarb1, scavenger receptor class B, member 1
Sequence ID:NM_001205082
NM_001205083
NM_016741
Entrez Gene ID:20778
Ensembl ID:ENSMUSG00000037936

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, placenta, pooled tissue, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 G1.1|5 64.11 cM

Chromosomal Position (from UCSC)

Chromosomal Position:5: 125277093 - 125341018


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3498018Full LengthBC004656scavenger receptor class B, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_058021  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001205082 NP_001192011    
NM_001205083 NP_001192012    
NM_016741 NP_058021 Q4FK30
Q61009
CD36

Related Sequences

 
mRNAGenPeptSwissProt
U37799 AAC52378 Q4FK30
Q61009
BC004656 AAH04656 Q4FK30
Q61009
AK010622 BAB27068 Q61009
AK028191 BAC25802 Q4FK30
Q61009
AK033114 BAC28157 Q4FK30
Q61009
AK080894 BAC38067 Q8BNQ0
AK154933 BAE32934 Q4FK30
Q61009
AK158122 BAE34368 Q3TZ42
AK169906 BAE41449 Q4FK30
Q61009
CT010222 CAJ18430 Q4FK30
Q61009

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Scarb1 NP_058021 R.norvegicus Scarb1 25073   NP_113729 92
H.sapiens SCARB1 949 Gene Info NP_001076428 79
A.gambiae SCRB9 1275121   XP_314346 34
D.melanogaster emp 37999   NP_523859 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)