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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Ddx39, DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Sequence ID:NM_197982
Entrez Gene ID:68278
Ensembl ID:ENSMUSG00000005481

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8 C2|8

Chromosomal Position (from UCSC)

Chromosomal Position:8: 83719385 - 83723275

 Exon Info From UCSC:
NM_197982

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3969048Full LengthBC020134DEAD (Asp-Glu-Ala-Asp) box polypeptide 39

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_932099  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_197982 NP_932099 Q8VDW0 EC 3.6.4.13 DEAD
Helicase_C

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC020134 AAH20134 Q8VDW0 EC 3.6.4.13
AK088894 BAC40637 Q8VDW0 EC 3.6.4.13
AK137114 BAE23239 Q3UVN0  
AK145927 BAE26758 Q8VDW0 EC 3.6.4.13
AK146294 BAE27051 Q8VDW0 EC 3.6.4.13
AK150997 BAE30021 Q8VDW0 EC 3.6.4.13
AK151395 BAE30363 Q3UAF1  
AK152394 BAE31182 Q3U837  
AK162752 BAE37049 Q8VDW0 EC 3.6.4.13
AK164289 BAE37719 Q3TPL7  
AK167890 BAE39902 Q3TIE4  
AK168079 BAE40052 Q8VDW0 EC 3.6.4.13
AK172448 BAE43010 Q3T9L0  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ddx39 NP_932099 R.norvegicus Ddx39a 89827   NP_446015 100
H.sapiens DDX39A 10212 Gene Info NP_005795 97
C.elegans hel-1 174333   NP_001021985 78
A.thaliana AT5G11170 830986   NP_568244 73
A.thaliana AT5G11200 830990   NP_001154706 61

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)