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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Adat1, adenosine deaminase, tRNA-specific 1
Sequence ID:NM_013925
Entrez Gene ID:30947
Ensembl ID:ENSMUSG00000031949

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:8|8 D3

Chromosomal Position (from UCSC)

Chromosomal Position:8: 111968405 - 111990373

NM_013925 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11637114490807114492443
16381724114496004114496090
17251824114501938114502037
18251970114503198114503343
19712574114506061114506664
25752705114511021114511151
27062760114511722114511776
27612829114513750114513818
28303037114514104114514311
30383159114516080114516201

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4458235Full LengthBC019976adenosine deaminase, tRNA-specific 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_038953  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_013925 NP_038953 Q9JHI2 A_deamin

Related Sequences

 
mRNAGenPeptSwissProt
AF192375 AAF36820 Q9JHI2
BC019976 AAH19976 Q9JHI2
AK035614 BAC29125 Q9JHI2
AK039699 BAC30422 Q9JHI2
AK082399 BAC38487 Q9JHI2
AK161044 BAE36167 Q9JHI2

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Adat1 NP_038953 R.norvegicus Adat1 690810   NP_001103081 89
H.sapiens ADAT1 23536 Gene Info NP_036223 78
D.melanogaster adat 34787   NP_609676 44
A.gambiae AgaP_AGAP009185 4578335   XP_001238233 38
A.thaliana AT1G01760 839252   NP_171681 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)