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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Rab40b, Rab40b, member RAS oncogene family
Sequence ID:NM_139147
Entrez Gene ID:217371
Ensembl ID:ENSMUSG00000025170

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 E2|11

Chromosomal Position (from UCSC)

Chromosomal Position:11: 121357036 - 121388139

NM_139147 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21188121217435121218621
11891411121219173121219395
14121489121220088121220165
14901550121220873121220933
15511611121224817121224877
16121865121249311121249564

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4974190Full LengthBC096601Rab40b, member RAS oncogene family

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_631886  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_139147 NP_631886 Q8VHP8
Q4VA07
Ras
SOCS_box

Related Sequences

 
mRNAGenPeptSwissProt
BC096601 AAH96601 Q8VHP8
Q4VA07
AF425643 AAL60520 Q8VHP8
Q4VA07
AB232638 BAF02900 Q4VA07

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Rab40b NP_631886 R.norvegicus Rab40b 303754   NP_001100546 99
H.sapiens RAB40B 10966 Gene Info NP_006813 93

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)