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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. 0610007C21Rik, RIKEN cDNA 0610007C21 gene
Sequence ID:NM_027855
Entrez Gene ID:381629
Ensembl ID:ENSMUSG00000013622

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, soft tissue, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5 B1|5

Chromosomal Position (from UCSC)

Chromosomal Position:5: 31048659 - 31054622

NM_027855 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11173135101231351128
1182363135183431351952
2373083135456931354640
3093803135483431354905
3815023135513531355256
5036003135633331356430
6019593135663531356993

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5714599Full LengthBC057097RIKEN cDNA 0610007C21 gene
6585654Full LengthBC049637RIKEN cDNA 0610007C21 gene

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_027855 NP_082131 Q6PGD0  

Related Sequences

 
mRNAGenPeptSwissProt
BC049637 AAH49637 Q6PGD0
BC057097 AAH57097 Q6PGD0
AK002276 BAB21981 Q6PGD0
AK151307 BAE30289 Q6PGD0
AK151366 BAE30340 Q6PGD0
AK169267 BAE41028 Q6PGD0
AB009018 BAF80619 A8C1S6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus 0610007C21Rik NP_082131 R.norvegicus RGD1311605 298841   NP_001120998 91
H.sapiens C2orf28 51374 Gene Info NP_542159 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)