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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Casp6, caspase 6
Sequence ID:NM_009811
Entrez Gene ID:12368
Ensembl ID:ENSMUSG00000027997

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:3|3 H1

Chromosomal Position (from UCSC)

Chromosomal Position:3: 129901460 - 129913829

NM_009811 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
182129604342129604423
83124129608383129608424
125274129608820129608969
275351129609318129609394
352527129613440129613615
528684129615035129615191
6851455129616249129617019

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3491126Full LengthBC002022caspase 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_033941  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_009811 NP_033941 O08738
Q99M47
EC 3.4.22.59 Peptidase_C14

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC002022 AAH02022 Q99M47  
AK011710 BAB27792 Q9D089  
AK146363 BAE27113 O08738
Q3TPJ9
EC 3.4.22.59
AK164321 BAE37737 O08738
Q3TPJ9
EC 3.4.22.59
AK165998 BAE38509 O08738
Q3TPJ9
EC 3.4.22.59
AK168842 BAE40665 O08738
Q3TPJ9
EC 3.4.22.59
Y13087 CAA73529 O08738
Q3TPJ9
EC 3.4.22.59

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Casp6 NP_033941 R.norvegicus Casp6 83584   NP_113963 96
H.sapiens CASP6 839 Gene Info NP_001217 92

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta