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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Trappc1, trafficking protein particle complex 1
Sequence ID:NM_001024206
Entrez Gene ID:245828
Ensembl ID:ENSMUSG00000049299

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11 B3|11 37.0 cM

Chromosomal Position (from UCSC)

Chromosomal Position:11: 69324107 - 69325746

NM_001024206 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1816913748769137567
821806913765969137757
1812516913789669137966
2523906913832569138463
3917456913894069139294

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40107010Full LengthBC115818trafficking protein particle complex 1
40107011Full LengthBC115921trafficking protein particle complex 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001019377  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001024206 NP_001019377 Q5NCF2 Sybindin

Related Sequences

 
mRNAGenPeptSwissProt
BC115818 AAI15819 Q14BF8
BC115921 AAI15922 Q14BF8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Trappc1 NP_001019377 R.norvegicus Trappc1 287427   NP_001034467 100
H.sapiens TRAPPC1 58485 Gene Info NP_001160093 99
D.melanogaster Bet5 43590   NP_651778 55
A.gambiae AgaP_AGAP000995 1270490   XP_309190 51
A.thaliana AT1G51160 841539   NP_175528 50
N.crassa NCU06176 3879136   XP_962988 46
S.pombe bet5 2543335   NP_594073 38

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)