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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Slx1b, SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)
Sequence ID:NM_029420
NR_033446
Entrez Gene ID:75764
Ensembl ID:ENSMUSG00000059772

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:7 F3|7

Chromosomal Position (from UCSC)

Chromosomal Position:7: 126689469 - 126689949

NM_029420 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12729133832440133835168
27302814133835252133835336
28152942133835441133835568
29433281133835834133836172
32823333133836266133836317
33343692133838938133839296

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40130991Full LengthBC145688GIY-YIG domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_083696  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_029420 NP_083696 Q8BX32 GIY-YIG

Related Sequences

 
mRNAGenPeptSwissProt
BC145688 AAI45689 Q8BX32
AK014753 BAB29533 Q8BX32
AK049139 BAC33566 Q8BX32
AK153779 BAE32181 Q3TQB5
AK163709 BAE37469 Q3TQB5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Slx1b NP_083696 R.norvegicus Slx1b 293489   NP_001009292 95
H.sapiens SLX1A 548593 Gene Info NP_001014999 78
H.sapiens SLX1B 79008 Gene Info NP_076949 78
A.gambiae AgaP_AGAP002259 1269300   XP_565552 47
D.melanogaster CG18271 40578   NP_649484 43
C.elegans F56A3.2 172157   NP_491541 40
S.pombe slx1 2541657   NP_593420 30

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)