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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Mm. Brix1, BRX1, biogenesis of ribosomes, homolog (S. cerevisiae)
Sequence ID:NM_026396
Entrez Gene ID:67832
Ensembl ID:ENSMUSG00000022247

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone marrow, brain, cerebellum, cerebrum, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, uncharacterized tissue
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:15 A1|15

Chromosomal Position (from UCSC)

Chromosomal Position:15: 10476181 - 10485824

NM_026396 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
118181040453310406350
181919471040656110406689
194820491040842310408524
205021001040864710408697
210121741040882710408900
217522241040900310409052
222522951040933510409405
229623391041147010411513
234024511041304910413160
245226541041548910415691

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4484024Full LengthBC014832brix domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_080672  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_026396 NP_080672 Q9DCA5 Brix

Related Sequences

 
mRNAGenPeptSwissProt
BC014832 AAH14832 Q9DCA5
AK002985 BAB22497 Q9DCA5
AK010171 BAC25283 Q8CEX3
AK168325 BAE40264 Q9DCA5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Brix1 NP_080672 R.norvegicus Brix1 294799   NP_001025086 97
H.sapiens BRIX1 55299 Gene Info NP_060791 92
D.melanogaster CG11583 326206   NP_001033989 53
S.cerevisiae BRX1 854078   NP_014565 51
A.gambiae AgaP_AGAP005365 1276069   XP_315375 50
A.thaliana AT1G52930 841726   NP_564618 48
A.thaliana AT3G15460 820785   NP_566514 48
N.crassa NCU01524 3873095   XP_956973 48
S.pombe brx1 2540268   NP_595107 45
C.elegans K12H4.3 176134   NP_498756 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)