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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Prdx5, peroxiredoxin 5
Sequence ID:NM_012021
Entrez Gene ID:54683
Ensembl ID:ENSMUSG00000024953

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, limb, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Expression Matrix

  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:19 A|19 0.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:19: 6906696 - 6909978

NM_012021 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
113369813086981440
13419569815556981616
19623469817316981769
23536669820316982162
36750169824716982605
50268869839486984134

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3481713Full LengthBC008174peroxiredoxin 5
3585739IncompleteBC014682peroxiredoxin 5

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_036151  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_012021 NP_036151 P99029 EC 1.11.1.15 Redoxin

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF197951 AAF04855 P99029 EC 1.11.1.15
AF124994 AAF27532 P99029 EC 1.11.1.15
AF110733 AAG13450 P99029 EC 1.11.1.15
BC008174 AAH08174 P99029 EC 1.11.1.15
BC014682 AAH14682 Q91YU9  
AB041573 BAA95057 Q9JHL8  
AK002383 BAB22058 P99029 EC 1.11.1.15
AK003332 BAB22720 P99029 EC 1.11.1.15
AK009858 BAB26548 Q9D6X2  
AK136130 BAE22835 Q3UWS9  
AK152653 BAE31390 Q3U7H9  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Prdx5 NP_036151 R.norvegicus Prdx5 113898   NP_446062 91
H.sapiens PRDX5 25824 Gene Info NP_036226 86
A.gambiae AgaP_AGAP001325 4577336   XP_001238545 61
D.melanogaster CG7215 3772662   NP_001027191 55
A.thaliana AT3G52960 824462   NP_190864 47
N.crassa NCU06880 3875424   XP_959227 43
S.pombe SPCC330.06c 2538981   NP_587706 37

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)