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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Ptn, pleiotrophin
Sequence ID:NM_008973
Entrez Gene ID:19242
Ensembl ID:ENSMUSG00000029838

Database Links

UniGeneEntrez GeneEnsembl GeneSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6 B1|6 13.5 cM

Chromosomal Position (from UCSC)

Chromosomal Position:6: 36714930 - 36810220

NM_008973 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
11003666566236665761
1012623669127736691438
2634363669332636693499
4375533669438836694504
55420213675989336761360

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3488877Full LengthBC002064pleiotrophin
6313227Full LengthBC061695pleiotrophin
2655628IncompleteBC048363pleiotrophin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_032999  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_008973 NP_032999 P63089 PTN_MK_C
PTN_MK_N

Related Sequences

 
mRNAGenPeptSwissProt
BC002064 AAH02064 P63089
BC061695 AAH61695 P63089
EF437379 ABS83537 B0LAE3
D90225 BAA14260 P63089
AK011346 BAB27557 P63089
AK011699 BAB27787 Q9CSX6
AK017768 BAB30917 Q9CYE5
AK133835 BAE21872 Q3UZI5
AK161847 BAE36603 Q3TSS2
AK161964 BAE36658 Q3TSL7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Ptn NP_032999 R.norvegicus Ptn 24924   NP_058762 100
H.sapiens PTN 5764 Gene Info NP_002816 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)