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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Mm. Lepre1, leprecan 1
Sequence ID:NM_001042411
NM_019782
NM_019783
Entrez Gene ID:56401
Ensembl ID:ENSMUSG00000028641

Database Links

UniGeneEntrez GeneEnsembl GeneVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4|4 D1

Chromosomal Position (from UCSC)

Chromosomal Position:4: 119232945 - 119248367

 Exon Info From UCSC:
NM_001042411
NM_019782
NM_019783

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5148677Full LengthBC024047leprecan 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_062756  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001042411 NP_001035874      
NM_019782 NP_062756     2OG-FeII_Oxy
NM_019783 NP_062757 Q3V1T4 EC 1.14.11.7  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
AF165163 AAF04806 Q3V1T4 EC 1.14.11.7
AF165164 AAF04807 Q3V1T4 EC 1.14.11.7
BC024047 AAH24047 Q3V1T4 EC 1.14.11.7
AK010578 BAB27041 Q3V1T4 EC 1.14.11.7
AK030436 BAC26962 Q3V1T4 EC 1.14.11.7
AK132262 BAE21065 Q3V1T4 EC 1.14.11.7
AK159505 BAE35138 Q3V1T4 EC 1.14.11.7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
M.musculus Lepre1 NP_062757 R.norvegicus Lepre1 114200   NP_446119 96
H.sapiens LEPRE1 64175 Gene Info NP_071751 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)